When Do Symptoms Appear?
Early Signs and Onset of FAP
FAP GI symptoms typically emerge during puberty and early adulthood, though manifestations vary based on the specific APC mutation location. Surveillance as soon as diagnosed with FAP is crucial for appropriate preventative care as some symptoms can appear at much younger ages and some manifestations are at high risk of occurring during childhood years than later in life. Additionally, some symptoms are congenital such as supernumerary teeth, hypodontia, or CHRPE.
Symptoms and Manifestations
Colorectal Symptoms
Many people with early FAP experience no symptoms at all—polyps are discovered through screening in at-risk family members or when symptoms finally develop. When symptoms do occur, they may include bright red blood in the stool or on toilet paper, changes in bowel habits (increased frequency, diarrhea, or constipation), and abdominal cramping or bloating. As polyps accumulate and chronic bleeding occurs, some individuals develop anemia symptoms including fatigue, weakness, or shortness of breath.
Other Health Manifestations
Beyond the colon, FAP can affect other parts of the digestive system and the entire body. FAP polyps are what are called adenoma polyps. Adenomas are precancerous polyps, meaning they automatically carry the risk of becoming cancerous. While biopsied adenomas may be determined to be benign, that is not the same as not being at risk of becoming cancerous, it simply means that polyp has not yet become cancerous, or malignant.
In FAP, adenomas can anywhere in the body. Specifically in the GI tract, in addition to the colon and rectum, adenomas may also develop in the esophagus, stomach (gastric polyps), duodenum (the first part of the small intestine), small intestine, through to the anus.
The stomach and duodenum are common areas for polyps requiring surveillance and to better understand the related terms often included in pathology results, let’s breakdown their anatomy.
The stomach is divided into 4 parts – cardia, fundus, body, and plyorus. The cardia is the first part of the stomach and is connected to the esophagus. The fundus is bulbous and dome shaped and at the end of it is the body of the stomach, the central and largest part. Ending the stomach is the pylorus which connects to the duodenum, the first part of the small intestine.
In addition to adenomas in the stomach, fundic gland polyps located in the fundus are also common among FAP patients and can be increased by PPI (Proton Pump Inhibitors) medication use. These polyps are generally benign and do not typically become cancerous in the general population. It is common for fundic gland polyps to have dysplasia in FAP patients and there is a difference between fundic gland polyps from PPI use and FAP associated fundic gland polyps. FAP associated fundic gland polyps tend to show more APC gene alterations where those caused by PPI use do not. It also been indicated that PPI use serves as a protective factor against in dysplasia in polyps for those with FAP and other conditions.
Stomach polyps may cause indigestion, stomach pain, nausea, or early feeling of fullness and require ongoing surveillance due to increased risk for cancer. Due to the fragile surface of a polyp, irritation can occur resulting in bleeding. The larger a polyp the more blood supply the polyp has and therefore, may bleed more than a smaller sized polyp.
The small intestine is divided into 3 parts – duodenum, jejunum, and ileum. The duodenum is the first part and is c-shaped, curving around the head of the pancreas and is divided into four parts – superior, descending, inferior, and ascending. Halfway along the second part of the duodenum is the ampulla, which serves as a junction of the biliary and pancreatic ducts and digestive tracts. The ampulla or ampulla of vater is a duct which connects to the duodenum. Other ducts connecting to the duodenum include the bile and pancreatic duct. The major duodenal papilla is where these ducts enter the duodenum and is controlled by the sphincter of Oddi, which surrounds the duodenum. The sphincter of Oddi is a valve that controls the flow of bile and pancreatic juice into the duodenum.
Sources: https://www.ncbi.nlm.nih.gov/books/NBK538233/ | https://pmc.ncbi.nlm.nih.gov/articles/PMC1885693/ | https://pubmed.ncbi.nlm.nih.gov/18237868/ | https://pubmed.ncbi.nlm.nih.gov/3258605/ | https://ajp.amjpathol.org/article/S0002-9440(10)64588-9/fulltext | https://www.cghjournal.org/article/S1542-3565%2807%2901114-7/fulltext | https://www.sciencedirect.com/science/article/abs/pii/S0039610905704023 | https://www.ncbi.nlm.nih.gov/books/NBK482390/ | https://pubmed.ncbi.nlm.nih.gov/20551649/ | https://www.ncbi.nlm.nih.gov/books/NBK459366/ | https://www.ncbi.nlm.nih.gov/books/NBK482334/
Soft Tissue Manifestations
In 10-25% of FAP patients, benign but aggressive tumors called desmoid tumors develop, typically in the abdomen. These can cause abdominal swelling, pain, or in severe cases, bowel obstruction symptoms. These desmoids require close monitoring and may need medical or surgical treatment.
Fibromas, lipomas, and epidermoid cysts are also associated with FAP. Fibromas and lipomas are both tumors that can grow anywhere in the body and are both generally benign. Fibromas are made up of fibrous or connective tissue while lipomas are made up of fatty tissue. Epidermoid cysts are slow growing bumps under the skin that may contain fluid, air, or other substances.
Dental and Bone Abnormalities
Dental and bone abnormalities associated with FAP include osteomas, impacted teeth, supernumerary teeth, hypodontia, and odontomas. Osteomas are benign, bone tumors that typically grow on the skull or jaw but may also develop in the sinuses, ribs, or long bones such as the legs. Supernumerary teeth and hypodontia are both congenital manifestations of FAP meaning that from birth the individual has extra permanent teeth or the absence of some permanent teeth, respectively. Odontomas are benign, dental tumors composed of dental tissue that grows in an irregular way.
Associated Cancers
Additional cancers commonly associated with FAP include other GI cancers, Thyroid, Pancreas, Liver, Central Nervous System, Adrenal, and Bile Ducts. However, FAP polyps (adenomas) can develop anywhere in the body.
Thyroid cancer occurs in approximately 2% of FAP patients, predominantly in women and particularly in those with Latinx heritage. Most thyroid nodules are discovered during screening exams without causing symptoms, though some individuals may notice throat discomfort or voice changes.
Children with FAP from ages 0-5 are at higher risk for hepatoblastoma (a type of liver cancer) requiring regular monitoring, typically every 3-6 months.
Eye Manifestations
Occasionally, small “freckles” or “bear tracks” called congenital hypertrophy of the retinal pigment epithelium (CHRPE) may be visible during an eye exam—these are generally harmless and don’t affect vision but can be a helpful diagnostic sign. Although generally harmless, maintaining regular monitoring of identified CHRPEs can be beneficial as a preventative measure should any changes begin to occur.
Diagnosis
Genetic Testing
The most definitive way to diagnose FAP is through genetic testing. A simple blood or saliva sample is sent to a laboratory where scientists examine your DNA for mutations in the APC gene. Testing methods include DNA sequencing to identify point mutations and small changes, as well as specialized analysis to detect larger mutations that may be missed by standard sequencing.
Per NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines®), Genetic/Familial High-Risk Assessment: Colorectal, Endometrial, and Gastric, 2025, genetic testing is recommended for individuals as soon as they are suspected of possibly having FAP. This includes those with a family history of FAP at any age including upon birth, anyone found to have 20 or more colorectal adenomas on endoscopy, or those with other clinical features suggesting FAP. The test successfully identifies an APC mutation in approximately 70-90% of FAP patients. The remaining 10-30% don’t show an identifiable mutation, which can occur due to rare genetic patterns or mechanisms not routinely detected by standard testing.
A positive genetic test can confirm your FAP diagnosis and allows your medical team to create a personalized surveillance plan and offers relatives the option of testing to know their status. If your genetic test is negative but you or your family history strongly suggests FAP, your doctor may still recommend colonoscopy surveillance—the absence of an identified mutation doesn’t rule out the possibility of FAP or other polyposis conditions.
Referenced with permission from the NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines®) for Genetic/Familial High-Risk Assessment: Colorectal, Endometrial, and Gastric V.1.2025.
© 2025 National Comprehensive Cancer Network, Inc. All rights reserved. Accessed January 8, 2026.
To view the most recent and complete version of the guideline, go online to NCCN.org. NCCN makes no warranties of any kind whatsoever regarding their content, use or application and disclaims any responsibility for their application or use in any way.
Due to the nature of Mosaic FAP, particularly for patients who do not meet the standard guideline for testing for FAP, targeted DNA testing remains important. It is due to this issue, that the authors of Prevalence and Consequences of APC Mosaicism in Patients with Colorectal Adenomas drafted testing and surveillance suggestions based off their findings.
For testing, the authors suggest APC mosaicism testing to also include patients with a negative germline genetic test for FAP but present with 20 or more colorectal polyps before age 60 or more than 30 before age 70. Additionally, because inheritance can’t be ruled out completely although as minimal likelihood as it may be, the group also suggests for germline genetic testing to be conducted for any offspring 12 or older.
Endoscopic Diagnosis
Colonoscopy is the primary tool for identifying FAP. This procedure involves inserting a long flexible camera into the colon to visualize the rectum and entire large bowel. It is often referred to as a lower scope in layman’s terms. In people with FAP, the colonoscopy often reveals either 100 or more adenomas (classic FAP), or 20-100 adenomas (possibly Attenuated FAP, a milder variant), or adenomas in young individuals under age 25-30. Polyps are photographed, mapped, and biopsied to confirm they are adenomas and check for dysplasia or cancer.
Dysplasia simply means an abnormality in the cells of a tissue or organ. It’s a term used for explaining a cell’s development changes in a biopsy’s pathology results. Dysplasia can be mild, moderate, or severe and is often described in a pathology report as low grade or high grade. Low grade dysplasia is mild abnormal changes whereas high grade is severe showing a higher number of abnormal cells and is considered an advanced precancer. Dysplasia can change over time, even regressing from high to low grade.
Once FAP is confirmed in the colon, an upper endoscopy, or upper scope, is encouraged to be performed to examine the stomach and duodenum (first part of the small intestine) for any polyps or cancer risk. This specialized procedure uses a side-viewing camera to carefully assess the upper GI tract, where polyps can also develop and may also progress to cancer.
Additional imaging is often obtained to screen for other FAP-related complications. Abdominal ultrasound or MRI looks for desmoid tumors and, in young children, hepatoblastoma. Thyroid ultrasound is typically performed annually, particularly in women, to screen for thyroid nodules.
Capsule Endoscopy, often referred to as a Camera Capsule Pill, is an additional surveillance tool available, particularly for the small intestine. In a capsule endoscopy, a small capsule that is equipped with a camera is swallowed and an external device for receiving the images is worn by the patient while they go about their day until the capsule has traveled through the GI tract and exited the body. Afterwards, the patient returns the recording device to their medical provider for review.
Genetic Counseling
Professional genetic counseling is an important part of FAP diagnosis and management. A genetic counselor is a healthcare professional with specialized training in genetics and hereditary disease who can explain your diagnosis, discuss what it means for you and your family, and help you navigate complex decisions.
Genetic counseling is recommended for newly diagnosed patients, at-risk family members, parents deciding whether to test children, and individuals with negative genetic testing but clinical evidence of FAP. A genetic counselor will explain your inheritance pattern and the statistical risks to family members, discuss the emotional and psychological impact of your diagnosis and genetic status, outline management and surveillance strategies tailored to your situation, and explore the implications for your relatives regarding testing and health decisions.
Education Resources
Empower Yourself – Learn from These Expert Resources
FAP & Me – A Guide to Familial Adenomatous Polyposis
A note to Parents
Welcome to “FAP & Me!” This booklet was written to reinforce the information about FAP that you, your doctors, and your genetic counselor have given your child. FAP & Me is useful in various ways, depending on the age of the child. Each child and family is different, and FAP & Me may have information that you have not shared with your child yet.
Please review FAP & Me to see whether the information is right for your child at this time. Your child may like reading FAP & Me with you, an older sibling, or another adult so that he or she can ask questions and have you explain things. We hope that FAP & Me is helpful!
– FAP & Me, a publication of the National Society of Genetic Counselors
A Patient’s Guide to FAP
The content in this guide is based on the National Comprehensive Cancer Network Clinical Practice Guidelines in Oncology “Genetic/Familial High-Risk Assessment: Colorectal” (2015).
This guide is intended to provide information for those affected by hereditary colon cancer syndromes and should not replace discussions or advice from your medical provider. We suggest you read this Guide in the order in which it is written, as each section builds upon information in previous sections. Medical terms in blue are explained in the glossary.
– paraphrased from ‘A Patient’s Guide to FAP’
Life’s a Polyp with Zeke and Katie
Yay, Yay DNA! Do You Wonder What Makes You You?
It’s all because of something called DNA.
What is DNA? It’s the instruction book for life. You have DNA. So do teeny little bugs, big elephants, tall trees, and colorful birds-every living thing has DNA! And you share DNA with just about every living thing on Earth. Join Mendel G. Cat and learn more about the tiny thin thread that connects all life.
– Mark A. Hicks
Shimmy the Shark and His Stoma










